The UEA small RNA Workbench

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  • Cloud-Based Workbench
  • Workflows
    • The Modules
      • PAREsnip2
      • The Database
        • File Setup Wizard
      • File Review
      • Normaliser
      • Data Report Plots
        • First Report
        • Second Report
      • miRCat2
      • Differential Expression
        • Offset Review
    • Preconfigured Workflows
      • PAREsnip2
        • Data Input and Analysis Configuration
        • Targeting Rules
      • Quality Checking and Normalisation
      • Quality Checking, Normalisation and Differential Expression
      • FiRePat
      • miRCat2
        • miRCat2 Setup and Run
        • miRCat2 Functions
  • Individual Tools
    • Helper Tools
      • Adapter Removal
      • Filter
      • Sequence Alignment
    • Analysis Tools
      • CoLIde
      • miRCat
      • miRProf
      • PAREsnip
      • SiLoCo
      • ta-si prediction
    • Visualisation Tools
      • RNA/Folding Annotation
      • VisSR
        • Viewing T-Plots
  • Tutorials
    • Workflow Tutorials
      • Quality Check, Normalisation and Differential Expression Tutorial
    • Helper Tools
      • Adapter Removal Tutorial
      • Filter Tutorial
      • Sequence Alignment Tutorial
    • Analysis Tools
      • CoLIde Tutorial
      • miRCat Tutorial
      • miRProf Tutorial
      • SiLoCo Tutorial
      • TA-SI Prediction Tutorial
    • Visualisation Tools
      • RNA Annotation Tutorial
      • VisSR Tutorial
  • Using the Workbench
    • What can the UEA sRNA Workbench do for you?
    • Using data sets in multiple tools. The History Browser
    • Frequently Encountered Problems
  • People

Initial DE setup

September 3, 2015 1248 × 426 Differential Expression

The Samples listed ready for configuration

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A suite of tools for analysing micro RNA and other small RNA data from High-Throughput Sequencing devices

External Websites

  • BBSRC BBSRC
  • miRBase miRBase
  • SYS Consulting Bioinformatics
  • The Elements Of Bioinformatics The Elements Of Bioinformatics

RSS The UEA Workbench

  • The Small RNA Workbench Version 4.5 May 2, 2018
    The small RNA Workbench Version 4.5 ALPHA: Released: 02/05/2018 This release is the next Alpha release of the latest version of the UEA sRNA Workbench, Version 4. Please check out the frequently encountered problems for a list of known issues. This version has two Java binaries. The first, ‘Workbench.jar’, is the standard binary for running […]
    small RNA Workbench
  • The small RNA Workbench Version 4.4 April 7, 2017
    The small RNA Workbench Version 4.4 ALPHA: Released: 07/04/2017 This release is the next Alpha test for the latest version of the workbench, Version 4.0 (check the frequently encountered problems for a list of known issues). This version is released as java binaries only to streamline the release process until the software moves into the stable […]
    M.B.Stocks
  • The small RNA Workbench Version 4.3.1 February 3, 2017
    The small RNA Workbench Version 4.3.1 ALPHA: Released: 03/02/2017 This release is the next Alpha test for the latest version of the workbench, Version 4.0 (check the frequently encountered problems for a list of known issues). This version is released as java binaries only to streamline the release process until the software moves into the stable […]
    M.B.Stocks
  • The small RNA Workbench Version 4.3 December 16, 2016
    The small RNA Workbench Version 4.3 ALPHA: Released: 16/12/2016 This release is the next Alpha test for the latest version of the workbench, Version 4.0 (check the frequently encountered problems for a list of known issues). This version is released as java binaries only to streamline the release process until the software moves into the stable […]
    M.B.Stocks
  • The small RNA Workbench Version 4.2.3 ALPHA November 9, 2016
    The small RNA Workbench Version 4.2.3 ALPHA: Released: 09/11/2016 This release is the next Alpha test for the latest version of the workbench, Version 4.0 (check the frequently encountered problems for a list of known issues). This version is released as java binaries only to streamline the release process until the software moves into the stable […]
    M.B.Stocks
  • The small RNA Workbench Version 4.2.2 ALPHA November 8, 2016
    The small RNA Workbench Version 4.2.2 ALPHA: Released: 08/11/2016 This release is the next Alpha test for the latest version of the workbench, Version 4.0 (check the frequently encountered problems for a list of known issues). This version is released as java binaries only to streamline the release process until the software moves into the stable […]
    M.B.Stocks
  • Good things come in small packages… July 19, 2016
    We used the small RNA Workbench among other bioinformatics tools to conduct a “miRNA Workshop 2016” at the Earlham institute. The goal was to train early-career bioinformaticians from across the globe how to analyse small RNA data generated by next generation sequencing for both animal and plant research. Read more at the following link: http://www.earlham.ac.uk/good-things-come-small-packages-microrna
    M.B.Stocks
  • The small RNA Workbench Version 4.2.1 ALPHA June 23, 2016
    The small RNA Workbench Version 4.2.1 ALPHA: Released: 23/06/2016 This release is the next Alpha test for the latest version of the workbench, Version 4.0 (check the frequently encountered problems for a list of known issues). This version is released as java binaries only to streamline the release process until the software moves into the stable […]
    M.B.Stocks
  • The small RNA Workbench Version 4.2 ALPHA June 20, 2016
    The small RNA Workbench Version 4.2 ALPHA: Released: 20/06/2016 This release is the next Alpha test for the latest version of the workbench, Version 4.0 (check the frequently encountered problems for a list of known issues). This version is released as java binaries only to streamline the release process until the software moves into the […]
    M.B.Stocks
  • The small RNA Workbench Version 4.0 ALPHA September 4, 2015
    The small RNA Workbench Version 4.0 ALPHA: Released: 04/09/2015 Download This release is an Alpha test for the newest version of the workbench (check the frequently encountered problems for a list of known issues). This version comes with an early release of a new tool that will be included in the final 4.0 Workbench Release […]
    M.B.Stocks
© 2014 UEA Computational Biology Laboratory