SiLoCo Tutorial

Welcome to the SiLoCo tutorial

If you wish to complete the tutorial yourself, please download the files found here and follow the video tutorial.

Alternatively just watch the video below to get an idea of how to use the sRNA Workbench to compare expression profiles of sRNAs in multiple Next Generation Sequence data samples by grouping them into loci based on genomic location.

Comparing sRNA expression profiles in NGS data

Data used in the tutorial:

sRNA Files:
GSM118373_Rajagopalan_col0_leaf_nr.fa
GSM154336_carrington_col0_flower_nr.fa
(found in the TutorialData download in: TutorialData/FASTA/RNAOME)

Genome file:
Ath_TAIR9.fa
(found in the TutorialData download in: TutorialData/FASTA/GENEOME)





Download Video:
Closed Format: “MP4”
Open Format: “OGG”

A suite of tools for analysing micro RNA and other small RNA data from High-Throughput Sequencing devices