Analysis Tools

The UEA sRNA Workbench can perform various types of analysis on prepared small RNA data taken from Next Generation Sequencing experiments. The tool you use for analysis depends on what information you wish to extract from your data. The following list gives a short detail on each analysis type and a link to the tool you should use for this analysis.

  • Predicting novel miRNA sequences – miRCat (tutorial)
  • Determine normalised expression levels of miRNA sequences found in miRBase from multiple input samples – miRProf (tutorial)
  • Compare sRNA expression levels from multiple input samples – SiLoCo (tutorial)
  • Predicting phased ta-siRNAs in plant datasets – ta-si Prediction (tutorial)
  • Degradome assisted miRNA target prediction – PAREsnip
  • Robert

    Is there any chance of an ETA on the PAREsnip tutorial?

    • The sRNA Workbench

      Hi Robert,

      I have not made this one yet, the author of the tool unfortunately has finished here and has not provided me with the raw footage as yet.

      I will probably just go ahead and make some myself but I need a bit more time to sort it out!

      Hopefully not too long, there is a pdf manual though if that helps until then?
      Cheers,
      Matt

A suite of tools for analysing micro RNA and other small RNA data from High-Throughput Sequencing devices