When using the UEA sRNA Workbench for your analysis please cite the following papers:

Beckers, M. L.; Mohorianu, I.; Stocks M. B.; Applegate, C.; Dalmay, T.; Moulton, V.
Comprehensive processing of high-throughput small RNA sequencing data including quality checking, normalization, and differential expression analysis using the UEA sRNA Workbench.
RNA. 2017 Jun;23(6):823-835.

 

Mohorianu, I.; Stocks, M.B.; Applegate, C.S.; Folkes, L.; Moulton, V.
The UEA Small RNA Workbench: A Suite of Computational Tools for Small RNA Analysis.
Methods Mol Biol. 2017;1580:193-224.

 

Stocks, M. B.; Moxon, S.; Mapleson, D.; Woolfenden, H. C.; Mohorianu, I.; Folkes, L.; Schwach, F.; Dalmay, T. & Moulton, V. (2012) The UEA sRNA workbench: a suite of tools for analysing and visualizing next generation sequencing microRNA and small RNA datasets. Bioinformatics ,Vol. 28,pp. 2059-2061

When using the PAREsnip tool please also cite:

Folkes, L.; Moxon, S.; Woolfenden, H. C.; Stocks, M. B.; Szittya, G.; Dalmay, T. & Moulton, V. (2012) PAREsnip: a tool for rapid genome-wide discovery of small RNA/target interactions evidenced through degradome sequencing.  Nucleic Acids Res, Vol. 40, pp. e103

When using the CoLIde tool please also cite:

I. Mohorianu, M. B. Stocks, J. Wood, T. Dalmay, and V. Moulton, “CoLIde: A bioinformatics tool for CO-expression based small RNA Loci Identification using high-throughput sequencing data.,” RNA biology, vol. 10, no. 7, Jun. 2013.

When using the miRCat2 tool please also cite:

Paicu, C.; Mohorianu, I.; Stocks, M. B.; Xu, P.; Coince, A.; Billmeier, M.; Dalmay, T.; Moulton, V.; Moxon, S.
miRCat2: Accurate prediction of plant and animal microRNAs from next-generation sequencing datasets.
Bioinformatics. 2017 Apr 12.

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