Category Archives: Publications

The following publications have all used the sRNA Workbench or the original UEA plant sRNA Toolkit (UPsT) for their analysis or cited the programs as part of a bioinformatics tools review.

Horizon Scientific Press: 2013

D. Mapleson, I. Mohorianu, H. Pais, M. B. Stocks, L. Folkes, and V. Moulton, “Processing large scale small RNA datasets in silico,” in Next Generation Sequencing: Technology and Applications, 1st ed., Horizon Scientific Press, 2013, pp. 41–65.

http://www.horizonpress.com/nextgenseq

Landes Bioscience SF: Bioinformatics 2013

I. Mohorianu, M. B. Stocks, J. Wood, T. Dalmay, and V. Moulton, “CoLIde: A bioinformatics tool for CO-expression based small RNA Loci Identification using high-throughput sequencing data.,” RNA biology, vol. 10, no. 7, Jun. 2013. 

http://www.landesbioscience.com/journals/rnabiology/toc/volume/10/issue/7/

Bioinformatics 2012

Stocks, M. B.; Moxon, S.; Mapleson, D.; Woolfenden, H. C.; Mohorianu, I.; Folkes, L.; Schwach, F.; Dalmay, T. & Moulton, V. (2012) The UEA sRNA workbench: a suite of tools for analysing and visualizing next generation sequencing microRNA and small RNA datasetsBioinformatics ,Vol. 28,pp. 2059-2061